Taxes 101: What Every Business Owner Should Know

Taxes are an unavoidable part of running a business — but with the right knowledge and systems in place, they don’t have to be overwhelming. Whether you’re a startup founder, a growing small business, or a seasoned entrepreneur, understanding the basics of how taxes work can help you avoid surprises and make better decisions year-round.

1. Choosing Your Business Structure

The way your business is structured determines how your taxes are calculated, filed, and paid. Common structures include:

  • Sole Proprietorship – Simplest setup; income is taxed on your personal return.

  • Partnership – Profits and losses pass through to partners’ personal returns.

  • Limited Liability Company (LLC) – Flexible structure; can be taxed as a sole proprietorship, partnership, or corporation.

  • S Corporation – Pass-through taxation with potential savings on self-employment taxes.

  • C Corporation – Separate entity with its own tax return; profits may be subject to double taxation.

2. Understanding Major Business Taxes

Most businesses deal with a combination of the following taxes:

  • Income Tax – Based on your business’s net profit.

  • Self-Employment Tax – Covers Social Security and Medicare for business owners.

  • Payroll Tax – Withheld from employees’ wages and matched by the employer.

  • Sales Tax – Collected from customers and remitted to the state.

  • Excise Tax – Applied to specific goods, services, or activities.

3. Estimated vs. Annual Tax Filing

Business owners often need to pay taxes quarterly instead of waiting until the end of the year:

  • Estimated Taxes – Due four times a year (April, June, September, January). These are prepayments toward your expected annual tax bill.

  • Annual Filing – You reconcile all income, deductions, and credits on your year-end tax return. Any overpayment results in a refund; underpayment may lead to penalties.

4. Common Problems That Require “Cleanup”

As a financial partner, I often see the same issues that can lead to headaches at tax time:

  • Incomplete or inaccurate transaction categorization

  • Mixing personal and business expenses

  • Missing receipts or supporting documents

  • Undeposited funds sitting in “suspense” accounts

  • Payroll not reconciled with quarterly filings

  • Sales tax collected but not remitted on time

5. The Importance of Bookkeeping for Taxes

A tax accountant can only work with what’s in your books. If the numbers aren’t accurate, your return won’t be either. Clean, reconciled books mean:

  • Accurate profit & loss and balance sheet reports

  • Clear tracking of deductible expenses

  • Easy identification of credits and deductions you qualify for

  • Faster tax preparation and fewer back-and-forth questions from your CPA

6. Before & After: The Value of Cleanup

Before: A business owner hands over their books in March, only to find dozens of uncategorized expenses, unreconciled bank accounts, and missing documentation. Their CPA has to spend hours fixing errors — delaying the filing and increasing fees.

After: With monthly reconciliations, categorized expenses, and complete records, the CPA receives a clean file. Filing is quick, accurate, and stress-free — with potential tax savings identified along the way.

7. Final Takeaway & Call to Action

Taxes aren’t just a once-a-year task — they’re a year-round process. By staying organized and proactive, you can reduce stress, avoid penalties, and keep more of your hard-earned money.

📌 Ready to get your books tax-ready? Let’s talk about how I can help you bridge the gap between daily bookkeeping and year-end tax prep. Contact me today to schedule a consultation.